Publications

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Journal Papers

  1. Melgarejo, M.; Pena-Reyes, C.A.; Implementing Interval Type-2 Fuzzy Processors [Developmental Tools]. Computational Intelligence Magazine, IEEE 2(1): 63 – 71. 2007. DOI PDF-iconPDF


  2. N. Grandjean, B. Charpiot, C.-A. Peña, M. C. Peitsch. Competitive Intelligence and Patent Analysis in Drug Discovery. Mining the competitive knowledge bases and patents. Drug Discovery Today: Technologies. 3:211-215, 2005. DOI


  3. A. Upegui, C.-A. Peña-Reyes, and E. Sanchez. Topology exploration of spiking neural networks on FPGAs. Microprocessors and Microsystems,. Vol. 29, no. 5, pp. 211-223. 1 June 2005. DOI


  4. C. A. Peña-Reyes. Evolutionary fuzzy modelling human diagnostic decisions. Annals of the New York Academy of Sciences, pages 190-211, May 2004. DOI PDF-icon PDF


  5. C. A. Peña-Reyes and M. Sipper. Fuzzy CoCo: A cooperative-coevolutionary approach to fuzzy modelling. IEEE Transactions on Fuzzy Systems, 9(5):727-737, October 2001. DOI PDF-iconPDF


  6. C. A. Peña-Reyes and M. Sipper. Evolutionary computation in medicine: An overview. Artificial Intelligence in Medicine, 19(1):1-23, May 2000. DOI


  7. H. F. Restrepo, C. A. Peña-Reyes, and A. Perez-Uribe. Hacia el desarrollo de nuevas máquinas computacionales: lecciones que aprendemos de la naturaleza. Energía y Computación, IX(2):40-47, 2000. PDF-iconPDF


  8. C. A. Peña-Reyes and M. Sipper. A fuzzy-genetic approach to breast cancer diagnosis. Artificial Intelligence in Medicine, 17(2):131-155, October 1999.
    DOI PDF-iconPDF


Book chapters

  1. M.-A. Barreto-Sanz, Andres Perez-Uribe, Carlos-Andres Pena-Reyes and Marco Tomassini. Tuning parameters in Fuzzy Growing Hierarchical Self-Organizing Artificial Neural Networks.
    Series: Studies in Computational Intelligence , Vol. 258 In. Franco, Leonardo; Elizondo, David A.; Jerez, José M. (Eds.) Constructive Neural Networks. 2009.
    DOI


  2. C.-A. Peña-Reyes and M. Sipper. Fuzzy CoCo: Balancing accuracy and interpretability of fuzzy models by means of coevolution.
    J. Casillas, O. Cordón, F. Herrera, and L. Magdalena, editors, Accuracy Improvements in Linguistic Fuzzy Modelling, volume 129 of Studies in Fuzziness and Soft Computing, pages 119-146. Physica-Verlag, 2003. DOI


  3. C.-A. Peña-Reyes and M. Sipper. Combining evolutionary and fuzzy techniques in medical diagnosis.
    M. Schmitt, H. N. Teodorescu, A. Jain, A. Jain, S. Jain, and L. C. Jain, editors, Computational Intelligence Techniques in Medical Diagnosis and Prognosis, volume 96 of Studies in Fuzziness and Soft Computing, chapter 14, pages 391-426. Springer-Verlag, Heidelberg, 2002. DOI


Book

C.-A. Peña-Reyes. Coevolutionary Fuzzy Modelling.
Lecture Notes in Computer Science 3204. Springer, 2004. 129 pages. ISBN: 3540229949. DOI

Ph.D. Thesis

C. A. Peña-Reyes. Coevolutionary Fuzzy Modelling.
PhD thesis, École Polytechnique Fédérale de Lausanne – EPFL, 2002. Nominee, 2002 Best thesis EPFL prize. PDF-iconPDF

PEER REVIEWED CONFERENCE

  1. D. Leite, X. Brochet, G. Resch, Y. Que, A. Neves, and C. Peña, Computational Prediction of Host-Pathogen Interactions Through Omics Data Analysis and Machine Learning, IWBBIO 2017. Bioinformatics and Biomedical Engineering pp 360-371, 2017. DOI


  2. Z. Mungloo, Y. Jaufeerally, and C. Peña, A Meta-Review of Feature Selection Techniques in the Context of Microarray Data, IWBBIO 2017. Bioinformatics and Biomedical Engineering pp 33-49, 2017. DOI


  3. N. Jakob, and C. Peña, Living Emerging Worlds for Games, WIVACE 2014. Advances in Artificial Life and Evolutionary Computation, Communications in Computer and Information Science, Vol. 445, pp 37-46, 2014. DOI


  4. M.-A. Barreto-Sanz, A. Bujard and C. Peña, Evolving very compact fuzzy systems for gene expression data analysis. Proceedings of the IEEE 12th International Conference on BioInformatics and BioEngineering, BIBE 2012, pp. 356-361, 2012.
    DOIPDF-iconPDF


  5. J. Rossier, C.A. Peña-Reyes, Extrinsic evolution of fuzzy systems applied to disease diagnosis, ICES 2010. Lecture Notes in Computer Science, Vol. 6274/2010, 226-237, 2010. DOI


  6. M.A. Barreto-Sanz, A. Perez-Uribe, C. A. Peña-Reyes, M. Tomassini, Fuzzy Growing Hierarchical Self-Organizing Networks. ICANN 2008, LNCS 5164, pp. 713-722, 2008. DOI


  7. M.A. Melgarejo, C.A. Peña-Reyes, E. Sanchez. A genetic-fuzzy system approach to control a model of the HIV infection dynamics. Proceedings of the IEEE International Conference on Fuzzy Systems, pp. 2323 – 2330, 2006. DOIPDF-iconPDF


  8. E. Jodoin, C.A. Pena-Reyes, E. Sanchez. A method for the fuzzification of categorical variables. Proceedings of the IEEE International Conference on Fuzzy Systems, 2006, pp.831 – 838, 2006. DOIPDF-iconPDF


  9. G. Mermoud, A. Upegui, C. A. Peña-Reyes, and E. Sanchez, “A Dynamically-Reconfigurable FPGA Platform for Evolving Fuzzy Systems,” J. Cabestany, A. Prieto, F. Sandoval (Eds.), Computational Intelligence and Bioinspired Systems, IWANN 2005, Vol. 3512 of Lecture Notes in Computer Science, pp. 572-581. Springer-Verlag, Berlin, 2005. DOI


  10. M. Melgarejo, A. Garcia, and C.-A. Peña-Reyes. Pro-Two: A hardware based platform for real-time type-2 fuzzy inference. Proceedings of the 2004 IEEE International Conference on Fuzzy Systems FUZZ-IEEE 2004, Volume: 2, pp. 977- 982. 2004. DOIPDF-iconPDF


  11. M. Melgarejo, C.-A. Peña-Reyes, and A. Garcia. Hardware architecture and FPGA implementation of a Type-2 fuzzy system. Proceedings of the 2004 Great Lakes Symposium on VLSI (GLSVLSI), 2004. pp. 458 – 461. DOI PDF-iconPDF


  12. M. Melgarejo, A. Garcia, and C.-A. Peña-Reyes. Architectural proposal and hardware realization of a type-2 fuzzy inference system. Proceedings of the X workshop IBERCHIP, IWS-2004, 2004.


  13. M. Melgarejo, C.-A. Peña-Reyes, and A. Garcia. Computational model and architectural proposal for a hardware type-2 fuzzy system. Proceedings of the 2nd IASTED International Conference on Neural Networks and Computational Intelligence NCI 2004, pp. 279-284, 2004.


  14. A. Upegui, C.-A. Peña-Reyes, and E. Sanchez. A hardware implementation of a network of functional spiking neurons with Hebbian learning. A. J. Ijspeert, D. Mange, M. Murata, S. Nishio, Eds., Bio-ADIT 2004 On-Conference Proceedings, pp. 399-409. Osaka University Forum 2004, Osaka, 2004.


  15. A. Upegui, C.-A. Peña-Reyes, and E. Sanchez. A methodology for evolving spiking neural network topologies on line using partial dynamic reconfiguration. Proceedings of the International Congress on Computational Intelligence – ICCI 2003. RedCIC – Colombian Network on Computational Intelligence, 2003.


  16. C. A. Peña-Reyes. Incremental fuzzy coco: Incremental coevolution of fuzzy systems. Proceedings of the International Congress on Computational Intelligence – ICCI 2003. RedCIC – Colombian Network on Computational Intelligence, 2003.


  17. C. A. Peña-Reyes. Island fuzzy coco: Island model-based coevolution of fuzzy systems. Proceedings of the Third European Symposium on Intelligent Technologies, Hybrid Systems and their implementation on Smart Adaptive Systems – EUNITE 2003, pages 353-362. ELITE Foundation, Verlag Mainz, 2003.


  18. C.-A. Peña-Reyes, R. Villa, L. Prieto, and E. Sanchez. COBRA: an evolved online tool for mammography interpretation. J. Mira and J. R. _Alvarez, editors, Proceedings of the International Work-conference on Artificial and Natural Neural Networks – IWANN2003, number 2686 in Lecture Notes in Computer Science, pages 726-733. Springer, 2003. DOI


  19. A. Upegui, C.-A. Peña-Reyes, and E. Sanchez. A functional spiking neuron hardware oriented model. J. Mira and J. R. _Alvarez, editors, Proceedings of the International Work-conference on Artificial and Natural Neural Networks IWANN2003, number 2686 in Lecture Notes in Computer Science, pages 136-143. Springer, 2003. DOI


  20. B. Mesot, C. A. Peña-Reyes, E. Sanchez, and A. Perez-Uribe. SOS++: Finding smart behaviors using learning and evolution. R. K. Standish, M. A. Bedau, and H. A. Abbass, editors, Artificial Life VIII. The 8th International Conference on the Simulation and Synthesis of Living Systems, pages 264-273. The MIT Press, 2002.


  21. J.L. Bermúdez, C. A. Peña-Reyes, F. Rachidi, and F. Heidler. Use of genetic algorithms to extract primary lightning current parameters. 5th International Symposium on Electromagnetic Compatibility, pages 241-246, 2002.


  22. C. A. Peña-Reyes, M. Sipper, and L. Prieto. Sensitive, specific, and interpretable: Evolving a fuzzy mammographic-interpretation assessment tool. 2002 IEEE International Fuzzy Systems Conference Proceedings, pages 837-842. IEEE Neural Network Society, 2002. DOIPDF-iconPDF


  23. C. A. Peña-Reyes and M. Sipper. The flowering of Fuzzy CoCo: Evolving fuzzy iris classifiers. V. Kurkova, N. C. Steele, R. Neruda, and M. Karny, editors, Proceedings of the 5th International Conference on Artificial Neural Networks and Genetic Algorithms (ICANNGA 2001), pages 304-307. Springer-Verlag, 2001. DOI


  24. C. A. Peña-Reyes and M. Sipper. Applying Fuzzy CoCo to breast cancer diagnosis. Proceedings of the 2000 Congress on Evolutionary Computation (CEC00), volume 2, pages 1168-1175. IEEE Press, Piscataway, NJ, USA, 2000. DOIPDF-iconPDF


  25. C. A. Peña-Reyes and M. Sipper. Designing breast cancer diagnostic systems via a hybrid fuzzy-genetic methodology.
    IEEE International Fuzzy Systems Conference Proceedings, volume 1, pages 135-139. IEEE Neural Network Council, 1999. DOIPDF-iconPDF


  26. C. A. Peña-Reyes and M. Sipper. Evolving fuzzy rules for breast cancer diagnosis. Proceedings of 1998 International Symposium on Nonlinear Theory and Applications (NOLTA’98), volume 2, pages 369-372. Presses Polytechniques et Universitaires Romandes, Lausanne, 1998.


  27. K. Solano, R. A. Chavarriaga, R. A. Nuñez, and C. A. Peña-Reyes. Controladores adaptables basados en mecanismos de inferencia difusa. Memorias del Segundo Congreso Asociación Colombiana de Automática, 1997.


  28. J. L. López, C. E. Quintero, M. Sacanamboy, J. O. Sánchez, O.M. Agudelo, and C. A. Peña-Reyes. Comparación entre sistemas difusos para el control de una banda transportadora dentro de un proceso de manufactura flexible. Memorias del Segundo Congreso Asociación Colombiana de Automática, 1997.